PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16437.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 317aa    MW: 34945.7 Da    PI: 8.9605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell  +v+++G+++W++I++ +  gR++k+c++rw + 
       PIN16437.1 14 KGPWSPEEDELLQTLVEKYGPRNWSLISKSIA-GRSGKSCRLRWCNQ 59
                     79******************************.***********985 PP
2Myb_DNA-binding54.33.1e-1768110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
       PIN16437.1  68 AFSSEEDETIIKAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                      79******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MAETGRRKEP DRIKGPWSPE EDELLQTLVE KYGPRNWSLI SKSIAGRSGK SCRLRWCNQL  60
SPQVEHRAFS SEEDETIIKA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKSLSMSE  120
EFENFDPEAH PPLKRSASVG PGTNISASGL CFNPGCPSGS DMSDSSPSVY HVYRPLAGTH  180
GISPREVQTD PVTSLSLSLP GSDPIQKTVT ETQMTPISDP NPKLVQSHPP PPPSPYLAMP  240
PPPPPPLPTQ QFVSAAQPTP EVAEKQFFSP QFLAVMQEMV RKEVRTYMAG IQKNGFCVQS  300
EAIRNAVIKR IGISKID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-78MYB family protein