PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN16067.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 27947 Da PI: 8.3252

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN16067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85	4.6e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr g+lKKA+EL vLCda+vaviifs tgklye++s PIN16067.1 9 KKIENVNSRQVTFSKRRGGLLKKAKELAVLCDAQVAVIIFSGTGKLYEFAS 59 68***********************************************86 PP
2	K-box	67.7	3.9e-23	80	174	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++ ++ ++ e++ Lk+eie+Lq ++ +++G++Le L++ eL++LeqqL +++ +++++K+++lleq+e+++ +ek++ ++n+aL +k+ee PIN16067.1 80 TADQQTDDQHKSLAEINALKDEIEKLQLKHSRMMGKELEGLTYDELRNLEQQLTEGILSVKDRKEKVLLEQLEKSKLQEKKIVQQNEALLEKIEE 174 44566667778889******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRGKIEIKK IENVNSRQVT FSKRRGGLLK KAKELAVLCD AQVAVIIFSG TGKLYEFASS 60 SMEQILGRYN QNHGNQELVT ADQQTDDQHK SLAEINALKD EIEKLQLKHS RMMGKELEGL 120 TYDELRNLEQ QLTEGILSVK DRKEKVLLEQ LEKSKLQEKK IVQQNEALLE KIEELRHHAR 180 LSGNETRLRA SKDSCISSSP MHECKSDMEG ISDTSLRLGF SSVDLSGKRK ISKMETINDC 240 KSAMILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	2e-53	MIKC_MADS family protein