PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN13507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 350aa    MW: 38403.4 Da    PI: 8.5041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN13507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.4e-201459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v++lG+++W++I++ ++ gR++k+c++rw + 
       PIN13507.1 14 KGPWSPEEDELLQKLVEKLGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59
                     79******************************.***********985 PP

2Myb_DNA-binding56.37.2e-1868110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
       PIN13507.1  68 AFTPEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                      79******************.*********.***********986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MAALAQRNEA DRIKGPWSPE EDELLQKLVE KLGPRNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPQVEHRAFT PEEDETIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCVSMSE  120
EFNNFDPEAQ QPLKRSASIG PGTKISTSGF CFNPGSPTGS DMSDSSHSGH HVYRPIARTG  180
GISPPDPQPD PVTSLSLSLS LSDSNSNPNT VAEPSMKPVP DPNPKPKLVL ETSLVNPGSV  240
QPTHQIQMFP SHPPPSPPPL PPAPFQSHQF PAAAQHTGDV ATSAQGVPEK QFFSPEFLAV  300
MQDMVRNEVR NEMRNYMAGM AGFEQNGFCM QSSEAIRNVV VKRMGISKID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-70MYB family protein