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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN10459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27647.2 Da PI: 9.5826 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.7e-32 | 21 | 71 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ PIN10459.1 21 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 71 79***********************************************95 PP | |||||||
2 | K-box | 107.3 | 1.8e-35 | 89 | 186 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkklee 100 s++ s ea+++++qqe++kL+++i+nLq+e+R++lGe+L+ Lsl+eL++Le+++ek+++kiRs+Knell+++ie +qk+ e +l+++n++Lr+k++e PIN10459.1 89 SNNGSMVEANTQYYQQEASKLRAQIRNLQTENRNMLGESLGALSLRELKNLETKVEKGISKIRSRKNELLFAEIECMQKRqEIDLHHNNQYLRAKIAE 186 344448999********************************************************************9984679***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MTFQSEISSD RKIGRGKIEI KRIENTTNRQ VTFCKRRNGL LKKAYELSVL CDAEVALIVF 60 SSRGRLYEYS NNSVKATIER YKKATSDSSN NGSMVEANTQ YYQQEASKLR AQIRNLQTEN 120 RNMLGESLGA LSLRELKNLE TKVEKGISKI RSRKNELLFA EIECMQKRQE IDLHHNNQYL 180 RAKIAETERA QQHMNLMPGN SDYDLVHPQP FDARDYLQVN GLQPNNDYSR QDQPPLQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-105 | MIKC_MADS family protein |