PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN08882.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 374aa MW: 42800 Da PI: 9.6215

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN08882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.1e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++mg + R +k+c +rw +yl PIN08882.1 4 RQRWQPEEDALLRAYVKQYGPKEWNLISQRMGkpLDRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	35.9	1.8e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + PIN08882.1 59 KGSLTPEEQNLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLDR DPKSCLERWK NYLKPGIKKG 60 SLTPEEQNLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQKNQHQ 120 DYSAPPCGAG ASPDKAAQGK YDHILETFAE KYVQPKLLSF QSQNNIIIPA GGSLPEPPPV 180 LSLGSVGFVD PMNPTAVLPP WMNTNNTPTT TSSLTSSSSS CTPSPSVSLT LSPSEPAVLD 240 PEIAIQPRFL PIHQISTLIL HCKEVEEGKE NWLRHKKEAT WRLNRLEQQL EAEKARRRRE 300 KTEEIEAKIR CLREEEMAYL TRMEGEYREQ LNEMQREAGA KEAKLMEVWR STHEKMEKLL 360 EKIGAQCQGV GRIH

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLDR DPKSCLERWK NYLKPGIKKG  60
SLTPEEQNLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQKNQHQ  120
DYSAPPCGAG ASPDKAAQGK YDHILETFAE KYVQPKLLSF QSQNNIIIPA GGSLPEPPPV  180
LSLGSVGFVD PMNPTAVLPP WMNTNNTPTT TSSLTSSSSS CTPSPSVSLT LSPSEPAVLD  240
PEIAIQPRFL PIHQISTLIL HCKEVEEGKE NWLRHKKEAT WRLNRLEQQL EAEKARRRRE  300
KTEEIEAKIR CLREEEMAYL TRMEGEYREQ LNEMQREAGA KEAKLMEVWR STHEKMEKLL  360
EKIGAQCQGV GRIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	2e-79	MYB family protein