PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN03481.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 639aa MW: 72686.7 Da PI: 9.0659

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN03481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.8e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l PIN03481.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	33.5	9.6e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l PIN03481.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDIRHR KRKRRGIDYN AEIPFEKRPP PGFYDVADEE RPTELVKFPT 240 TIEELEGERR VDREARLRKQ DIARNKIAQR QDAPSAILQA NKLNDPEAVR KRSKLNLPAP 300 QIPDHELEAI AKIGIASDLV GDEELSEGNA ATRALLASYA QTPRQGMTPM RTPHRTPVGK 360 QDAIMMEAEN QRRLTQSQTP LLGGENPMVH PSDFSGVTPK KRDMATPNPL LTPSATPGGP 420 GLTPRIGMTP SRDAYSLGST PKGTPMRDEL HINEDMDMHE SGKLRQSDTR KELLSGLKNL 480 PQPKNEYQIV IQPAPEDDEE PEEKIEEDMS DRIAREKAEE DARQQALLKK RSKVLQRELP 540 RPPPSSLDLI RNSLMRADED KSSFVPPTLV EQADELIRKE LLSLLEHDNV KYPLDEKATK 600 EKKKSGKRSA NGKSVPVPSI DDFEENELKE VWLSISFLT

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDIRHR KRKRRGIDYN AEIPFEKRPP PGFYDVADEE RPTELVKFPT  240
TIEELEGERR VDREARLRKQ DIARNKIAQR QDAPSAILQA NKLNDPEAVR KRSKLNLPAP  300
QIPDHELEAI AKIGIASDLV GDEELSEGNA ATRALLASYA QTPRQGMTPM RTPHRTPVGK  360
QDAIMMEAEN QRRLTQSQTP LLGGENPMVH PSDFSGVTPK KRDMATPNPL LTPSATPGGP  420
GLTPRIGMTP SRDAYSLGST PKGTPMRDEL HINEDMDMHE SGKLRQSDTR KELLSGLKNL  480
PQPKNEYQIV IQPAPEDDEE PEEKIEEDMS DRIAREKAEE DARQQALLKK RSKVLQRELP  540
RPPPSSLDLI RNSLMRADED KSSFVPPTLV EQADELIRKE LLSLLEHDNV KYPLDEKATK  600
EKKKSGKRSA NGKSVPVPSI DDFEENELKE VWLSISFLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDIRHRKRKRR
2	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein