PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01411.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 123aa    MW: 13835.2 Da    PI: 10.7976
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.5e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +rien s rqvtfskRrng+lKKA+ELSv Cdaeva+iifs++g+l+e+ss
  PIN01411.1  9 ERIENASSRQVTFSKRRNGLLKKAYELSVRCDAEVALIIFSQKGRLHEFSS 59
                69***********************************************96 PP
2K-box22.54.7e-09961233865
       K-box  38 llGedLesLslkeLqqLeqqLekslkki 65 
                 llG +L+++s++eLq++ +qLe+slk+i
  PIN01411.1  96 LLGHNLGTCSMEELQNIGEQLERSLKNI 123
                 79************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MVRGKIGMER IENASSRQVT FSKRRNGLLK KAYELSVRCD AEVALIIFSQ KGRLHEFSSS  60
NSIFTVLVPI LQHRGTVAIV TKILNSHTRK VLAIFLLGHN LGTCSMEELQ NIGEQLERSL  120
KNI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-39MIKC_MADS family protein