PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01348.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 295aa    MW: 34144.6 Da    PI: 9.9539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++++  +G g+W++ a++ g++Rt+k+c++rw++yl
       PIN01348.1 26 RGPWTLEEDNLLIKYISCHGEGRWNSLAKCAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding53.36.3e-1779122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Iar+++ gRt++++k++w++
       PIN01348.1  79 RGNLTPQEQLLILELHSKWGNR-WSKIARHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MIMSKVRINP KGPSTNLYES SSELRRGPWT LEEDNLLIKY ISCHGEGRWN SLAKCAGLKR  60
TGKSCRLRWL NYLKPDIKRG NLTPQEQLLI LELHSKWGNR WSKIARHLPG RTDNEIKNYW  120
RTRVQKQARQ LKIDSNSNKF LEAIRRFWMP RLIEKMEQTS SLTSSISTME TQNFTAPLPV  180
SKQAPPPSSP CPKPSTVVNI SDSNSFSQRP ESFGSLTSGK IQFENTHEDN YYSVGIPTYD  240
LQELEPQVMS LGECHVSEID WFGEDLGSST FWNTDELWQF RKVXKKKKKK ELKVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-93MYB family protein