PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN00110.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 535aa MW: 58063.4 Da PI: 4.9576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN00110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l PIN00110.1 42 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	52	1.7e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE++l++++++++G++ W++ a++++ gRt++++k++w++ PIN00110.1 95 KGAFTLEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 138 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MKKMGCSITN ESEDGVLSAD SPLSNDGDNS GGSSDGGIVL KKGPWTSAED AILIDYVKKH 60 GEGNWNAVQK HSGLARCGKS CRLRWANHLR PNLKKGAFTL EEEQLIIELH AKMGNKWARM 120 AAHLPGRTDN EIKNYWNTRI KRRQRAGLPL YPPELCLPAV PENQQSLNSH GLYGGDKGHN 180 DILQTDNYKT PDFIFDSANI FPYTADFPDI SASGSLITGF GCPQFYNFAP QTLGLQKSTQ 240 DPDELMSDYG RGAADEAPSS DGAHSDNCEN KISQSFGFCF SYEPNTKKLL PFGVHQDSHF 300 MSNGFLSASK PFAGAEKLEL PSLQYQETGL GVWDPAPESI DSFVQSSTGG QLPSDCPSPR 360 SSGLLEALLY EAKFLSKSEN QLSDKATSST ISAGDVTDSS ALKTCSADFK GYLDPTSPSA 420 NSMGSIFNEC TPTHTVGSSL EEKLPAGLVK SEAFDQNWNQ LHCYRPEAML GSSWLQQGAS 480 FSKQQGFEHD SIAAFLNDDL GSELNMSAGT CACSWGLSSC TWNNMPAVCQ MSDHR

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MKKMGCSITN ESEDGVLSAD SPLSNDGDNS GGSSDGGIVL KKGPWTSAED AILIDYVKKH  60
GEGNWNAVQK HSGLARCGKS CRLRWANHLR PNLKKGAFTL EEEQLIIELH AKMGNKWARM  120
AAHLPGRTDN EIKNYWNTRI KRRQRAGLPL YPPELCLPAV PENQQSLNSH GLYGGDKGHN  180
DILQTDNYKT PDFIFDSANI FPYTADFPDI SASGSLITGF GCPQFYNFAP QTLGLQKSTQ  240
DPDELMSDYG RGAADEAPSS DGAHSDNCEN KISQSFGFCF SYEPNTKKLL PFGVHQDSHF  300
MSNGFLSASK PFAGAEKLEL PSLQYQETGL GVWDPAPESI DSFVQSSTGG QLPSDCPSPR  360
SSGLLEALLY EAKFLSKSEN QLSDKATSST ISAGDVTDSS ALKTCSADFK GYLDPTSPSA  420
NSMGSIFNEC TPTHTVGSSL EEKLPAGLVK SEAFDQNWNQ LHCYRPEAML GSSWLQQGAS  480
FSKQQGFEHD SIAAFLNDDL GSELNMSAGT CACSWGLSSC TWNNMPAVCQ MSDHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-118	MYB family protein