PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM98956.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 320aa    MW: 35775.9 Da    PI: 5.9561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM98956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l++ +++ G+g+W+t ++  g+ R++k+c++rw +yl
       PIM98956.1 14 KGPWTPEEDTKLIQHIQMQGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.84.6e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
       PIM98956.1  67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRSPCCDKN GLKKGPWTPE EDTKLIQHIQ MQGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLGMG  120
IDPVTHAPRL DLLDLSSLLN SPQLNLSNLL SLQTLINPDA LRLALSLLSS HTENPDIFLL  180
QKLQENHLLN SQLQNQAPVV QPNQFDNIGT QQIPNQSQSL QGDMGQIFQN NSSGQGLNSN  240
LPSFCNGISD QFGADVSSDN SSFQSLNSNS SNNNSQNLSF ESGLSTPLIN GSTEDERDQS  300
FCSNLLRFEI PEGLDFDNFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.16e-85MYB family protein