PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50979.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 648aa MW: 71535.3 Da PI: 7.5547

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5.2e-12	305	361	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a+++a++k++g PHT50979.1 305 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEDKAARAYDQAALKYWG 361 78*****************77776664346655.7799************98 PP
2	AP2	46.1	1.3e-14	404	455	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PHT50979.1 404 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 455 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MKMKSMNDDS SSSNNSNSNN NNHSSAATNS NNWLGFSLSP HMKMEVTNAS ETQQQQHQHQ 60 QQFAQSFYLS SSPTTMNVST ASALCYENNP FHSSLSVMPL KSDGSLCIME ALSRSHADAM 120 VQSSSPKLED FLGGASQYGS HEREAMALSL DSLYYHQNDE DIQVHSHHPY YSPMHCHGMY 180 QESLLEETKP TQISNCDAQM TGNEMKSWGH YAIDQHINDT CSMVAAAAVA AGGVGGVGTV 240 GCNDLQSLSL SMNPGTQSSC VTPRQISPTG LECVAIESKK RASAKVAQKQ PVHRKSIDTF 300 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEDKAAR AYDQAALKYW 360 GPSTHINFPL ENYQKELEEM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA 420 RIGRVAGNKD LYLGTFSTQE EAAEAYDVAA IKFRGVNAVT NFDISRYDVE KIMASNTLPA 480 GELARRTKER EPRESIEYNN ISVHKNEECV QNNNNNNGNI ADWKMVLYQA SNPSIGSNNY 540 RNPSFSVALQ DLIGIDSINN STSHATILDH EQNKIGANHI SNASSLVTSL GSSREASPDK 600 TAASLVFAKP TKFVVPSTNV NACIPSAQLR PIPVSMAHLP VFAALNDA

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MKMKSMNDDS SSSNNSNSNN NNHSSAATNS NNWLGFSLSP HMKMEVTNAS ETQQQQHQHQ  60
QQFAQSFYLS SSPTTMNVST ASALCYENNP FHSSLSVMPL KSDGSLCIME ALSRSHADAM  120
VQSSSPKLED FLGGASQYGS HEREAMALSL DSLYYHQNDE DIQVHSHHPY YSPMHCHGMY  180
QESLLEETKP TQISNCDAQM TGNEMKSWGH YAIDQHINDT CSMVAAAAVA AGGVGGVGTV  240
GCNDLQSLSL SMNPGTQSSC VTPRQISPTG LECVAIESKK RASAKVAQKQ PVHRKSIDTF  300
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDMEDKAAR AYDQAALKYW  360
GPSTHINFPL ENYQKELEEM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA  420
RIGRVAGNKD LYLGTFSTQE EAAEAYDVAA IKFRGVNAVT NFDISRYDVE KIMASNTLPA  480
GELARRTKER EPRESIEYNN ISVHKNEECV QNNNNNNGNI ADWKMVLYQA SNPSIGSNNY  540
RNPSFSVALQ DLIGIDSINN STSHATILDH EQNKIGANHI SNASSLVTSL GSSREASPDK  600
TAASLVFAKP TKFVVPSTNV NACIPSAQLR PIPVSMAHLP VFAALNDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-157	AP2 family protein