PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM07G22980.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 538aa MW: 59448 Da PI: 4.4432

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G22980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.2e-14	32	76	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W+teEd+ l ++++G+++W+ Ia+ + +t+ qc+ rw++yl OGLUM07G22980.1 32 SWSTEEDDVLRTQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 76 6**************************9.************7 PP
2	Myb_DNA-binding	41.6	2.8e-13	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd+ll +a k lG++ W+ Ia+ + gRt++ +k+r+ + OGLUM07G22980.1 82 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 125 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DNWTIIAAQF 60 KDKTARQCRR RWYNYLNSEC KKGGWSREED LLLCEAQKVL GNKWTEIAKV VSGRTDNAVK 120 NRFSTLCKRR AKDDELFKEN GSLCSSTSAK RALAQTGCLT SGASGSAPPI KQMRPCNSDF 180 KENMTPNMRL VGQDKSTQDS RQPLAIVYQN NQDNMNTMDT QNLVAKTAAK QLLAGEQNCV 240 KHEGNFLNKD DPKIATLLQR ADLLCSLATK INTENTSQSM DEAWQQLQHH LDKKDDNDMS 300 ESSMSGMASL LEDLDDLIVD PYENEEEEDQ DLREQTEQID VENKQNSSQT SMEVTSQMVP 360 DNKMEDCPND KSTEDNNMEP CPGEDIPTSE NLTEAAIEDS LLQCVEYSSP VHTVIQAKTD 420 AEIAASENLS EVLEHNRLQC IQLASPAQTT TPVEANAETP ASEKLSEVVK CNNPSCIEFT 480 SPAHTVPTFL PYADDMPTPK FTASERNFLL SVLELTSPGS RPDTSQQPSC KRALLNSL

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MATGPDLTPP AAAASAEAPS ASAAKKDRHI VSWSTEEDDV LRTQIALHGT DNWTIIAAQF  60
KDKTARQCRR RWYNYLNSEC KKGGWSREED LLLCEAQKVL GNKWTEIAKV VSGRTDNAVK  120
NRFSTLCKRR AKDDELFKEN GSLCSSTSAK RALAQTGCLT SGASGSAPPI KQMRPCNSDF  180
KENMTPNMRL VGQDKSTQDS RQPLAIVYQN NQDNMNTMDT QNLVAKTAAK QLLAGEQNCV  240
KHEGNFLNKD DPKIATLLQR ADLLCSLATK INTENTSQSM DEAWQQLQHH LDKKDDNDMS  300
ESSMSGMASL LEDLDDLIVD PYENEEEEDQ DLREQTEQID VENKQNSSQT SMEVTSQMVP  360
DNKMEDCPND KSTEDNNMEP CPGEDIPTSE NLTEAAIEDS LLQCVEYSSP VHTVIQAKTD  420
AEIAASENLS EVLEHNRLQC IQLASPAQTT TPVEANAETP ASEKLSEVVK CNNPSCIEFT  480
SPAHTVPTFL PYADDMPTPK FTASERNFLL SVLELTSPGS RPDTSQQPSC KRALLNSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	5e-84	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G22980.1