PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM06G21530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 590aa MW: 65022.9 Da PI: 5.5928

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G21530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	157	204	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l OGLUM06G21530.1 157 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 204 79******************************************9986 PP
2	Myb_DNA-binding	41.9	2.3e-13	210	253	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ OGLUM06G21530.1 210 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 253 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MQPDSTDRLA GRHAGCSERA ADTKQMIIFR KFTTKSKKHS MQYCKPRLHR WIVPNPNGKP 60 FYYSTSLSAA AAAAHLVSTP GSSPMEEEEA ARLAGSQGES PAMLHPNGDG DGDGDGGDDE 120 GDASGGEEEQ GGVARAGVRR RGGGGRVRVR GRIPLKKGPW TPDEDKRLRE YVEAHGEGNW 180 NRVQRNAGLN RCGKSCRLRW ANHLKPDLKK GPFSKEEEEM IIKLHLWLGN KWAKMANSLP 240 GRTDNEIKNF WNTRCKRIQR TGEPLYPKEF NHFKLTDLEV MNCESPDESR AKKRTNEVLQ 300 GNGQSYKEVF FNNLDYSRPE NYIRPNCVTP NSLPVDATSP FGSAIATQDQ SVPFGSAIVS 360 GHPILDGNFS TSGTIQRPMN VELPSLQYPN YDFNNNNAWS YHDPLGHPID QVDFGSLRSE 420 YLSPNNNGLL DALVHGGHGQ GELANSQGSF DACFPRVQCN QVIQSNAFSL SSSFPIIGDD 480 LLENSCHAFV GINNNASSLF LDSQPPPLVD PTFWRHDVSL EPNLPVYCQF NEELPPSNEQ 540 FAKDADDAFG HGGLSDETNL AAAGQGDEHD LENPWASMPG ACDIPDFPSE

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MQPDSTDRLA GRHAGCSERA ADTKQMIIFR KFTTKSKKHS MQYCKPRLHR WIVPNPNGKP  60
FYYSTSLSAA AAAAHLVSTP GSSPMEEEEA ARLAGSQGES PAMLHPNGDG DGDGDGGDDE  120
GDASGGEEEQ GGVARAGVRR RGGGGRVRVR GRIPLKKGPW TPDEDKRLRE YVEAHGEGNW  180
NRVQRNAGLN RCGKSCRLRW ANHLKPDLKK GPFSKEEEEM IIKLHLWLGN KWAKMANSLP  240
GRTDNEIKNF WNTRCKRIQR TGEPLYPKEF NHFKLTDLEV MNCESPDESR AKKRTNEVLQ  300
GNGQSYKEVF FNNLDYSRPE NYIRPNCVTP NSLPVDATSP FGSAIATQDQ SVPFGSAIVS  360
GHPILDGNFS TSGTIQRPMN VELPSLQYPN YDFNNNNAWS YHDPLGHPID QVDFGSLRSE  420
YLSPNNNGLL DALVHGGHGQ GELANSQGSF DACFPRVQCN QVIQSNAFSL SSSFPIIGDD  480
LLENSCHAFV GINNNASSLF LDSQPPPLVD PTFWRHDVSL EPNLPVYCQF NEELPPSNEQ  540
FAKDADDAFG HGGLSDETNL AAAGQGDEHD LENPWASMPG ACDIPDFPSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	8e-55	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G21530.1