PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM06G08200.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 320aa MW: 35962.9 Da PI: 6.3442

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G08200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l +++++G +W+ ++ g++R++k+c++rw +yl OGLUM06G08200.1 14 KGPWTPEEDEKLMSYIQKHGHASWRVLPELAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l OGLUM06G08200.1 67 RGNFSREEEQTILQLHSILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MGRPPCCDEN GLKKGPWTPE EDEKLMSYIQ KHGHASWRVL PELAGLNRCG KSCRLRWTNY 60 LKPDIKRGNF SREEEQTILQ LHSILGNKWS AIAKHLPGRT DNEIKNFWNT HLRKKLIKMG 120 IDPMTHRPRT DFFQSLPQLI ALANLRQIIE RQPWDGHIEG LQTVAVQAAK LEYMQSLLHS 180 AVSIVTSPTT TSSSLNTFTT ELEQTNHLCP PQVPSSSVPE LAVQVPHSQM PSTSFDQEIG 240 KTNLFSNNIV NGNEWCSMEA DNSSQKSLLV PENSIPPLID MPVQNFCNTI STPNCDGGNS 300 IPLPSWSEIL LDEELMGEFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-97	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G08200.1