PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM06G00580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 390aa MW: 41809.1 Da PI: 5.636

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G00580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv+++ + G g+W++ ++ g++R++k+c++rw +yl OGLUM06G00580.1 15 KGPWTPEEDKLLVEYIGKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	48.2	2.6e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+ l++++++ lG++ W++Ia ++ gRt++++k++w+++l OGLUM06G00580.1 68 RGGFSDDEERLIIHLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113 7889****************.****9.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ 120 GIDPVTHRPR TDLLAGLPNL LAAANLGGAA HQLPLDLNAI KLQADAAKFQ ILQGLLRVLA 180 STTAPPPTAA VLPGTELMTS ILGATLAANS AGILGQQQQQ QQQLASVDLS RLGQYNGNYD 240 NLPPLTNDSC TQQTQPAMSS MSPDSLLNRI SSGISGDMLS SPELGQGGPS ASNMTTSPMA 300 APPPMVAADD HQCNTNTPSG GGGGGDGMSC EQTPASSTFD GLNLDDIDIN DMEGCWAMTD 360 MLLAEQCPSW LISSNNASEM YISKNNTSEM

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ  120
GIDPVTHRPR TDLLAGLPNL LAAANLGGAA HQLPLDLNAI KLQADAAKFQ ILQGLLRVLA  180
STTAPPPTAA VLPGTELMTS ILGATLAANS AGILGQQQQQ QQQLASVDLS RLGQYNGNYD  240
NLPPLTNDSC TQQTQPAMSS MSPDSLLNRI SSGISGDMLS SPELGQGGPS ASNMTTSPMA  300
APPPMVAADD HQCNTNTPSG GGGGGDGMSC EQTPASSTFD GLNLDDIDIN DMEGCWAMTD  360
MLLAEQCPSW LISSNNASEM YISKNNTSEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-74	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G00580.1