PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G23540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 341aa    MW: 37146.9 Da    PI: 7.0407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G23540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-151564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv+ +k+ Gg+  +W+  +r  g++R++k+c++rw +yl
  OGLUM04G23540.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRGLPRAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP

2Myb_DNA-binding51.62.1e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E+ l++++++ lG++ W+tIa ++  gRt++++k++w+++
  OGLUM04G23540.1  70 RGNFSDDEERLIIRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RGLPRAAGLN RCGKSCRLRW  60
TNYLRPDIRR GNFSDDEERL IIRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL  120
RMGIDPVTHQ RLPPDLLADG GGLGAASPLL SPPRPAAAAA LQPLLSAVAS LGSLDTALRQ  180
FQLLQHLLNS ITSSSSDVTA TAGLMATNLA ATNTMVNSSS NVASFQEQMN ALAHANYKPG  240
YLRDVVPSFP GQDMAPQLNS TNNSTPSTAP VLRSSAEPAD QCCNDAALVP ETYPREVAAS  300
VDHWKVQDFP SLEPLELPNL STLESDLDPF WKEILESSFR S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.12e-68MYB family protein