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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G23540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 341aa MW: 37146.9 Da PI: 7.0407 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ +k+ Gg+ +W+ +r g++R++k+c++rw +yl OGLUM04G23540.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRGLPRAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E+ l++++++ lG++ W+tIa ++ gRt++++k++w+++ OGLUM04G23540.1 70 RGNFSDDEERLIIRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RGLPRAAGLN RCGKSCRLRW 60 TNYLRPDIRR GNFSDDEERL IIRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL 120 RMGIDPVTHQ RLPPDLLADG GGLGAASPLL SPPRPAAAAA LQPLLSAVAS LGSLDTALRQ 180 FQLLQHLLNS ITSSSSDVTA TAGLMATNLA ATNTMVNSSS NVASFQEQMN ALAHANYKPG 240 YLRDVVPSFP GQDMAPQLNS TNNSTPSTAP VLRSSAEPAD QCCNDAALVP ETYPREVAAS 300 VDHWKVQDFP SLEPLELPNL STLESDLDPF WKEILESSFR S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 2e-68 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G23540.1 |