PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM03G14490.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 358aa MW: 38795 Da PI: 5.1982

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G14490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWTteEde+l+ +++++G g+W++ ++ g+ R++k+c++rw +yl OGLUM03G14490.1 14 RGRWTTEEDEKLAGYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	42.9	1.1e-13	67	139	1	48
TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++ ++++++ lG++ +W++Ia++++ gRt++++k++w+++l OGLUM03G14490.1 67 RGNISNQEEDVIIKLHATLGNRksyvmkrreyvslgardycfqqnthvRWSLIASHLP-GRTDNEIKNYWNSHL 139 788999**************************************************.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MGRAPCCEKV GLKRGRWTTE EDEKLAGYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRAGVKRGNI SNQEEDVIIK LHATLGNRKS YVMKRREYVS LGARDYCFQQ NTHVRWSLIA 120 SHLPGRTDNE IKNYWNSHLS RQIHTYRRTY TAPSEAAVTI DVTKLQAAGK RRGGRTAGQS 180 RKGDKKRAED DPPKETAAAD TPLPESSPRR AQSDEARSGS VVVDPEEPSS QPNNGSSGGG 240 GGTPDGPCSE ETATGPTSLD PMEMGLWEAE SEFAEMEALL CGGVAPDGPG IPGLEPLDVA 300 AQADDLLDMD WDGFAADLWG DPAQRGGLVQ DAGEPNGSMG CSSDELESFA SWLLSDSC

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MGRAPCCEKV GLKRGRWTTE EDEKLAGYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRAGVKRGNI SNQEEDVIIK LHATLGNRKS YVMKRREYVS LGARDYCFQQ NTHVRWSLIA  120
SHLPGRTDNE IKNYWNSHLS RQIHTYRRTY TAPSEAAVTI DVTKLQAAGK RRGGRTAGQS  180
RKGDKKRAED DPPKETAAAD TPLPESSPRR AQSDEARSGS VVVDPEEPSS QPNNGSSGGG  240
GGTPDGPCSE ETATGPTSLD PMEMGLWEAE SEFAEMEALL CGGVAPDGPG IPGLEPLDVA  300
AQADDLLDMD WDGFAADLWG DPAQRGGLVQ DAGEPNGSMG CSSDELESFA SWLLSDSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-62	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G14490.1