PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

OGLUM02G22040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 342aa MW: 36307.6 Da PI: 7.0791

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G22040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.5e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ + + g++R++k+c++rw +yl OGLUM02G22040.1 15 KGPWTPEEDQKLLAYIEQHGHGCWRSLPTKAGLRRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l OGLUM02G22040.1 68 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MGRSPCCEKE AGLKKGPWTP EEDQKLLAYI EQHGHGCWRS LPTKAGLRRC GKSCRLRWTN 60 YLRPDIKRGK FTLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAKM 120 GIDPVTHKPR VDADADVAAG GGAAGGGARS RAAAHLSHTA QWESARLEAE ARMAREAKLR 180 ALASPPPATA ALSGVDSPTS TLSFSESALF GAGSAAPDIH GAARAAAVQA VQSSYGEACQ 240 EHHFGGATAE TSFAGAGTLA GVLLDCSVTG ADQRFAERTE ACSGELQGED DDDKGYWNSI 300 LNMVNSSMSS SSSSLTSEVV TDTEMFLPAT AAAAASATPV EF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MGRSPCCEKE AGLKKGPWTP EEDQKLLAYI EQHGHGCWRS LPTKAGLRRC GKSCRLRWTN  60
YLRPDIKRGK FTLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAKM  120
GIDPVTHKPR VDADADVAAG GGAAGGGARS RAAAHLSHTA QWESARLEAE ARMAREAKLR  180
ALASPPPATA ALSGVDSPTS TLSFSESALF GAGSAAPDIH GAARAAAVQA VQSSYGEACQ  240
EHHFGGATAE TSFAGAGTLA GVLLDCSVTG ADQRFAERTE ACSGELQGED DDDKGYWNSI  300
LNMVNSSMSS SSSSLTSEVV TDTEMFLPAT AAAAASATPV EF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	3e-88	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G22040.1