PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM01G33320.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 375aa MW: 40032 Da PI: 5.3866

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G33320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.7e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l v+++G+ +W + +++ g++R++k+c++rw++yl OGLUM01G33320.1 14 RGPWSEEEDAILRSFVERFGNAgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89****************99***********************97 PP
2	Myb_DNA-binding	42.8	1.2e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l++ + ++G++ W+ Ia++++ gRt++++k++w++ OGLUM01G33320.1 69 GGFTDEEDNLILSLYGEMGSK-WSVIASKLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MGRSPCCDKA SVKRGPWSEE EDAILRSFVE RFGNAGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPAIRHGG FTDEEDNLIL SLYGEMGSKW SVIASKLPGR TDNDVKNYWN TKLKKRYLAA 120 VATEATTPPP PAAGDDDNNP TTQASSQPAP PTLPAPLVNL DAAGLDGAVG DNDELLLHKS 180 EQLYAELMGL IEQQQYSTIT AAAVDAATTT TSWSSPSTGT TSPTASSSTD GSSSSSNLPW 240 PAVDVHDSTM MPPLSESSGS SSGLFFGSHA FGSGSFQDLL GSAASFDDVM LSQEMLLASK 300 VLVNMISVLM ALTAAIRLDV PAKLWARGAN APFPTGHPNP FVLERLLRLL TSCSVFCEHK 360 GSPRHFALTT GDDES

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MGRSPCCDKA SVKRGPWSEE EDAILRSFVE RFGNAGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPAIRHGG FTDEEDNLIL SLYGEMGSKW SVIASKLPGR TDNDVKNYWN TKLKKRYLAA  120
VATEATTPPP PAAGDDDNNP TTQASSQPAP PTLPAPLVNL DAAGLDGAVG DNDELLLHKS  180
EQLYAELMGL IEQQQYSTIT AAAVDAATTT TSWSSPSTGT TSPTASSSTD GSSSSSNLPW  240
PAVDVHDSTM MPPLSESSGS SSGLFFGSHA FGSGSFQDLL GSAASFDDVM LSQEMLLASK  300
VLVNMISVLM ALTAAIRLDV PAKLWARGAN APFPTGHPNP FVLERLLRLL TSCSVFCEHK  360
GSPRHFALTT GDDES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	6e-65	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G33320.1