PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60707.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 358aa MW: 40133 Da PI: 6.774

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G+g+W+ ++ g+ R++k+c++rw +yl GAY60707.1 14 KGPWTPEEDHKLISYIQLHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ GAY60707.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDHKLISYIQ LHGPGNWRNL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG 120 IDPVTHAPRL DLLDLSAILR STLCGSSASL LNMSSLLGGS THQALLNPEL LRLASTLLSL 180 KQDNPEMLLQ YLQQNQQLCN SQMQNQIPAM SNLNQFHQAP LSDQSPTCTT SAAACTSLPD 240 QSQLTQADLD GLLSNLTNFN SQNLSQENLI PPSFDENFAS QPLPNQMYNR SSNGNQHFRF 300 DSVMSSTPLS SPTPLNSSST FINSSTEDER ESYCSSLLKF EIPESLDIND FISEHSFN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDHKLISYIQ LHGPGNWRNL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG  120
IDPVTHAPRL DLLDLSAILR STLCGSSASL LNMSSLLGGS THQALLNPEL LRLASTLLSL  180
KQDNPEMLLQ YLQQNQQLCN SQMQNQIPAM SNLNQFHQAP LSDQSPTCTT SAAACTSLPD  240
QSQLTQADLD GLLSNLTNFN SQNLSQENLI PPSFDENFAS QPLPNQMYNR SSNGNQHFRF  300
DSVMSSTPLS SPTPLNSSST FINSSTEDER ESYCSSLLKF EIPESLDIND FISEHSFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-92	MYB family protein