PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57958.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 636aa MW: 72065.9 Da PI: 8.3908

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.8e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l GAY57958.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	33.5	9.6e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l GAY57958.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRRGIDYN AEIPFEKKPP PGFFDVTDED RPVELVSFPT 240 TIEELEGKRR VDIEAQLRRQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLI AGNEELTEGS GATRALLANY AQTPQRGMTP SRTPQRTPAG 360 KGDAVMMEAE NLARMRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGG 420 MGSTPRIGMT PSRDGSSFGV TPKGTPIRDE LHINEDLDMH DSAKLEQRRQ AELRRNLRLG 480 LTSLPQPTNE YQIVVQPPAE EDEEPEEKIE EDMSDRLARE KAEEEARQQA LLRKRSKVLQ 540 RELPRPPVAS LELIRNSLLR ADGDKSSFVP PTSIEQADEI IRKELLKLLE HDNAKYPLDE 600 KVAKKKKGNK RSANGPTAPI PVIEDFEEDE LQEVGV

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRRGIDYN AEIPFEKKPP PGFFDVTDED RPVELVSFPT  240
TIEELEGKRR VDIEAQLRRQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLI AGNEELTEGS GATRALLANY AQTPQRGMTP SRTPQRTPAG  360
KGDAVMMEAE NLARMRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGG  420
MGSTPRIGMT PSRDGSSFGV TPKGTPIRDE LHINEDLDMH DSAKLEQRRQ AELRRNLRLG  480
LTSLPQPTNE YQIVVQPPAE EDEEPEEKIE EDMSDRLARE KAEEEARQQA LLRKRSKVLQ  540
RELPRPPVAS LELIRNSLLR ADGDKSSFVP PTSIEQADEI IRKELLKLLE HDNAKYPLDE  600
KVAKKKKGNK RSANGPTAPI PVIEDFEEDE LQEVGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRQRKRKRR
2	199	205	QRKRKRR
3	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein