PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY56628.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 319aa    MW: 36165.6 Da    PI: 6.6701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY56628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lvd++ ++G g+W++ ++  g++R++k+c++rw +yl
       GAY56628.1 15 KGPWTREEDQKLVDCIGRHGHGNWSALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.41.4e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+++eE+ ++++++  lG++ W++Ia++++ gRt++++k++w+++
       GAY56628.1  68 RGRFSEEEERIIINLHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 112
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MGRSPCCDES RSLKKGPWTR EEDQKLVDCI GRHGHGNWSA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIRRGR FSEEEERIII NLHSVLGNKW SRIASHLPGR TDNEIKNFWN THIRKKFLQM  120
GIDPITHKPR VDLSQLLNLP QTLYSSPFGN LSTSPFGNNN ALKLQTDATQ LARIELLQNL  180
LQLMNKSAVI PNVGNYSGAL GFDNLNQPFQ NVMAQATLQN PGSSPQATGE LEAQINSLSW  240
FEAGLEQFEV LNDHDVISNE NSSYGHNIQQ ECKLPPMVNA SCDETPSLSQ TDHHFAAYEA  300
WEKFIDDETS DSYWKKFLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-89MYB family protein