PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY55257.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 343aa MW: 38162.3 Da PI: 6.7919

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY55257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl GAY55257.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.3	2.3e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l GAY55257.1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 TGSDGGQNNQ DGFSSTSQQA SNKGQWERRL QTDIHMAKQA LCEALSLDKT STTSPANLLL 180 SPDQSNLKPM SSTTYNNTPY ASNAENISRL LQNWMKNPPK ISETTQDSFT NMAYASAAGS 240 GSNISSEGAL SATTPEGFDS LFSFNSSNSD ASQSETTANL TSETSLFQDE SKPKLDSRHH 300 HHHQVPLTLL EKWLFDDVAA AHQGHDDDDL INMSLEDSTV GFF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
TGSDGGQNNQ DGFSSTSQQA SNKGQWERRL QTDIHMAKQA LCEALSLDKT STTSPANLLL  180
SPDQSNLKPM SSTTYNNTPY ASNAENISRL LQNWMKNPPK ISETTQDSFT NMAYASAAGS  240
GSNISSEGAL SATTPEGFDS LFSFNSSNSD ASQSETTANL TSETSLFQDE SKPKLDSRHH  300
HHHQVPLTLL EKWLFDDVAA AHQGHDDDDL INMSLEDSTV GFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-111	MYB family protein