PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY54210.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 551aa MW: 60169.9 Da PI: 4.9121

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY54210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.4e-17	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ + g+ R++k+c++rw ++l GAY54210.1 38 KGPWTSAEDAILIDYVKKHGEGNWNAVQKNSGLFRCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	52.7	9.9e-17	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++ +v++++++G++ W++ a++++ gRt++++k++w++ GAY54210.1 91 KGAFTQEEEQMIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 134 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MSCSSNGSDD MMLSNDQTDS PLMDEGGGGT ARGVILKKGP WTSAEDAILI DYVKKHGEGN 60 WNAVQKNSGL FRCGKSCRLR WANHLRPNLK KGAFTQEEEQ MIVELHAKMG NKWARMAAHL 120 PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VSFQALQESQ CQNINGINSG DKGHHDLLQA 180 NGYEIPDVVF DSLKANQGVV PYVPDIPDIT ASTMLMKGLG SQYCSFVSPV MHRPKRLRES 240 VPLFSAYGGS VKNEFSFDQF HNDTSDKIAR SFGLSFPLDP DTTPKAPESF GMLQGSHTLS 300 NGNFSASKPN LGAVKLELPS LQYTETDLGS WGTSSPQPLL ETVDAFIQSP PPTGTLDSGC 360 PSPRNSGLLD ALIHESNTLK NHSSDKSSNS SSVTPDVADS CTRNFCETEW EDYSDPLSPL 420 GHSATSLFNE CTPLSASGSS LDEQAPVETF GYKVKSEPVD QAWTPDREKE SGNLFVSQPD 480 ALLASDWFEH GSSYVKDPIV MNDAIATLLG DDLRSEYKQM STGTSAPSQG WGFSSCAWNN 540 MPAVCQMSEL P

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MSCSSNGSDD MMLSNDQTDS PLMDEGGGGT ARGVILKKGP WTSAEDAILI DYVKKHGEGN  60
WNAVQKNSGL FRCGKSCRLR WANHLRPNLK KGAFTQEEEQ MIVELHAKMG NKWARMAAHL  120
PGRTDNEIKN YWNTRIKRRQ RAGLPLYPPE VSFQALQESQ CQNINGINSG DKGHHDLLQA  180
NGYEIPDVVF DSLKANQGVV PYVPDIPDIT ASTMLMKGLG SQYCSFVSPV MHRPKRLRES  240
VPLFSAYGGS VKNEFSFDQF HNDTSDKIAR SFGLSFPLDP DTTPKAPESF GMLQGSHTLS  300
NGNFSASKPN LGAVKLELPS LQYTETDLGS WGTSSPQPLL ETVDAFIQSP PPTGTLDSGC  360
PSPRNSGLLD ALIHESNTLK NHSSDKSSNS SSVTPDVADS CTRNFCETEW EDYSDPLSPL  420
GHSATSLFNE CTPLSASGSS LDEQAPVETF GYKVKSEPVD QAWTPDREKE SGNLFVSQPD  480
ALLASDWFEH GSSYVKDPIV MNDAIATLLG DDLRSEYKQM STGTSAPSQG WGFSSCAWNN  540
MPAVCQMSEL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-144	MYB family protein