PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY52286.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 462aa MW: 49961 Da PI: 5.512

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY52286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	49	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G ++W Iar ++ gR++k+c++rw + GAY52286.1 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRLRWCNQ 94 79****************************.*********985 PP
2	Myb_DNA-binding	56.2	8.1e-18	101	145	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd++++ a++ +G++ W+ Iar ++ gRt++ +k++w++ GAY52286.1 101 RKPFTDEEDQIIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 145 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MSEKKEDSVS KSQNDDVDGA IVVEDSSEPG GGGDGGGGGG GGSSSSRVKG PWSPEEDAVL 60 SRLVSQFGAR NWGMIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDQ IIISAHAVHG 120 NKWAVIARLL PGRTDNAIKN HWNSTLRRRY TDLGRFKPAL GDMTEDGSLD RTKGSSEETL 180 SVGDVNPLKP LEGRDVTMDD RPNRLEDMAQ TNGGEFTAVP KQHSTFPCPV GDINSCKLPE 240 GRDVTMNDTP KMHEDRAERM EVEFAAGPKP HPTLPRPVAR VSAFSLYNSP SGLTPCSGIP 300 RAVPTQGPLV QAPRLDLGIC KFLEDVCSEP IIPSQCGYGC CASPTGHHLH SSLLGPEFVD 360 YEEPPAFSSH ELISIATDLN NIAWIKSGLE NSNVGVPGNA ASERMTQGTS SDPRMEISEQ 420 SVKRDMRFEE GRNKLTGMMT DVLPAQVPRQ SFAMRAQVEG LS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MSEKKEDSVS KSQNDDVDGA IVVEDSSEPG GGGDGGGGGG GGSSSSRVKG PWSPEEDAVL  60
SRLVSQFGAR NWGMIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDQ IIISAHAVHG  120
NKWAVIARLL PGRTDNAIKN HWNSTLRRRY TDLGRFKPAL GDMTEDGSLD RTKGSSEETL  180
SVGDVNPLKP LEGRDVTMDD RPNRLEDMAQ TNGGEFTAVP KQHSTFPCPV GDINSCKLPE  240
GRDVTMNDTP KMHEDRAERM EVEFAAGPKP HPTLPRPVAR VSAFSLYNSP SGLTPCSGIP  300
RAVPTQGPLV QAPRLDLGIC KFLEDVCSEP IIPSQCGYGC CASPTGHHLH SSLLGPEFVD  360
YEEPPAFSSH ELISIATDLN NIAWIKSGLE NSNVGVPGNA ASERMTQGTS SDPRMEISEQ  420
SVKRDMRFEE GRNKLTGMMT DVLPAQVPRQ SFAMRAQVEG LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-107	MYB family protein