PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY50686.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 308aa    MW: 34592.5 Da    PI: 7.6472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY50686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-072872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT++E +++ +a + + ++   +W ++a++++ g+t  +++  + 
       GAY50686.1 28 KWTPQENKQFENALAVYDKDtpdRWIKVAAMIP-GKTVGDVIKQYK 72
                     8********************************.****99988775 PP
2Myb_DNA-binding45.91.3e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
       GAY50686.1 136 PWTEEEHRQFLMGLKKFGKGDWRNISRNFVTTRTPTQVASHAQKY 180
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MNRGIEILSP ASYLENSNWL FQESKGTKWT PQENKQFENA LAVYDKDTPD RWIKVAAMIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YGNDSFTLEW VDSNQGYDGL KNFYGPGGKR  120
GSSTRPSDQE RKKGVPWTEE EHRQFLMGLK KFGKGDWRNI SRNFVTTRTP TQVASHAQKY  180
FNRQLTGGKD KRRSSIHDIT TVNLDETATS SSENNKPPSP SPSAAVIQLQ QQPKMVDMSN  240
EQFNWKSQNE GTAMLFNSMN GTAFMAPFCG ISSYGPKLQE QNLLGGNLNG SQFGAYSAYF  300
QMQSMQHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-125MYB family protein