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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY49011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38009.8 Da PI: 6.5629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ v+ +G g+W+++++ g+ R++k+c++rw +yl GAY49011.1 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ +++d ++ lG++ W+ Ia++++ gRt++++k++w++ GAY49011.1 66 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MGHNCCSKQK VKRGLWSPEE DEKLIKHVTT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EQEERIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIARGI 120 DPNTHNLISP TSCAQIYTNS TYSNACNKLP HQVQLSNSPV FLADSHMKEI IKSPHLTSPF 180 NNVSSLDLIN TTQYSISPSI LHEISSLLPA SEYQNPNQFW TLPEQNPHAS SMESANPCGF 240 GLIDENNGLL GGSFFEITET DAGKETMLQP LMIDAQQEKV CEVGNGKITN ELNDNGQNMN 300 ASFERADFDF DDHLVESTAL SCGMYCNFSP IMNQFAWD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 8e-83 | MYB family protein |