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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY48263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 1046aa MW: 114347 Da PI: 4.9577 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.4e-19 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l GAY48263.1 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.8 | 7.8e-21 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l GAY48263.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.6 | 1.9e-15 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ GAY48263.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1046 aa Download sequence |
MESDRVISAP SDGLGDGGQR MRSMHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLE QFQGLPLVGH QNQPLPSSSQ RMQSSGDESC PKGGTEGEEV 240 SECSQESAGV AHTHSAGNVV LQTRDQFIFS EESCPGKDRS SSPASCTEQY YTSLEDVTFS 300 IPEIPCEAGC SSKFPEQSFV NNAGSFARTP YQFNLQDVSN FSALELGHQS AGLPAHCISS 360 HEGHEVANVP FQSSMGLSVP SSAGNLAAGS AKPENMLISD DECCRVLFAE AMKDGCFSLE 420 NLPQGLNIVD SLLCRSLDVP ISESDRTSSS QAFCPLRPEL LGTSCSQSFL SGPMLLLPDD 480 SGFLYGREPS QLNCHSYGTQ EQELNTNGQA GFICTNESTN SPCDDGTDNS GLQESSYLPK 540 DSLKLVPINT FGSGADAMIS CPSVEVKQEA QTEQQDSGAL CYEPPRFPSL DIPFFSCDLI 600 QSGNDMLQEY SPLGIRQLMS SMNCITPFRL WDSPSRDGSP EAVLKSAAKT FTGTPSILKK 660 RNRDLLSPLS DRRNDKKLET DLTSCLARDF SRLDVMFDDG AANKASLLSP SSNQKRNSGS 720 FIEDKENLSG GQEKDKDIIV KDKTSEKDFD GSNSQENMKP KTVDTDSKTK IDADAASETV 780 KKPASILVEH NMNDLLFSPD QVGSKANRAL GSLARTPRTQ YCKGFGVTAN QGFSSEQSPR 840 NTSSPAVCKR SNESSAGAVA SVQAIPSLAL TGETTTTAGN DAGTENYNIF GETPFKRSIE 900 SPSAWKSPWF INSFVPGPRV DTEISIEDIG YFMSPGDRSY DALGLMKQLS EHTAAAYADA 960 LEVLGGESSE TLVNERNSKS PSMDQGIEHL PENENESSHL DSNVMMERRT LDFSECGTPA 1020 KGTETRKSLT GVNFSSPSSY LLKGCR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | MYB family protein |