PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY48263.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 1046aa MW: 114347 Da PI: 4.9577

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY48263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.4e-19	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l GAY48263.1 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	65.8	7.8e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l GAY48263.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.6	1.9e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ GAY48263.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence
MESDRVISAP SDGLGDGGQR MRSMHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLE QFQGLPLVGH QNQPLPSSSQ RMQSSGDESC PKGGTEGEEV 240 SECSQESAGV AHTHSAGNVV LQTRDQFIFS EESCPGKDRS SSPASCTEQY YTSLEDVTFS 300 IPEIPCEAGC SSKFPEQSFV NNAGSFARTP YQFNLQDVSN FSALELGHQS AGLPAHCISS 360 HEGHEVANVP FQSSMGLSVP SSAGNLAAGS AKPENMLISD DECCRVLFAE AMKDGCFSLE 420 NLPQGLNIVD SLLCRSLDVP ISESDRTSSS QAFCPLRPEL LGTSCSQSFL SGPMLLLPDD 480 SGFLYGREPS QLNCHSYGTQ EQELNTNGQA GFICTNESTN SPCDDGTDNS GLQESSYLPK 540 DSLKLVPINT FGSGADAMIS CPSVEVKQEA QTEQQDSGAL CYEPPRFPSL DIPFFSCDLI 600 QSGNDMLQEY SPLGIRQLMS SMNCITPFRL WDSPSRDGSP EAVLKSAAKT FTGTPSILKK 660 RNRDLLSPLS DRRNDKKLET DLTSCLARDF SRLDVMFDDG AANKASLLSP SSNQKRNSGS 720 FIEDKENLSG GQEKDKDIIV KDKTSEKDFD GSNSQENMKP KTVDTDSKTK IDADAASETV 780 KKPASILVEH NMNDLLFSPD QVGSKANRAL GSLARTPRTQ YCKGFGVTAN QGFSSEQSPR 840 NTSSPAVCKR SNESSAGAVA SVQAIPSLAL TGETTTTAGN DAGTENYNIF GETPFKRSIE 900 SPSAWKSPWF INSFVPGPRV DTEISIEDIG YFMSPGDRSY DALGLMKQLS EHTAAAYADA 960 LEVLGGESSE TLVNERNSKS PSMDQGIEHL PENENESSHL DSNVMMERRT LDFSECGTPA 1020 KGTETRKSLT GVNFSSPSSY LLKGCR

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence

MESDRVISAP SDGLGDGGQR MRSMHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLE QFQGLPLVGH QNQPLPSSSQ RMQSSGDESC PKGGTEGEEV  240
SECSQESAGV AHTHSAGNVV LQTRDQFIFS EESCPGKDRS SSPASCTEQY YTSLEDVTFS  300
IPEIPCEAGC SSKFPEQSFV NNAGSFARTP YQFNLQDVSN FSALELGHQS AGLPAHCISS  360
HEGHEVANVP FQSSMGLSVP SSAGNLAAGS AKPENMLISD DECCRVLFAE AMKDGCFSLE  420
NLPQGLNIVD SLLCRSLDVP ISESDRTSSS QAFCPLRPEL LGTSCSQSFL SGPMLLLPDD  480
SGFLYGREPS QLNCHSYGTQ EQELNTNGQA GFICTNESTN SPCDDGTDNS GLQESSYLPK  540
DSLKLVPINT FGSGADAMIS CPSVEVKQEA QTEQQDSGAL CYEPPRFPSL DIPFFSCDLI  600
QSGNDMLQEY SPLGIRQLMS SMNCITPFRL WDSPSRDGSP EAVLKSAAKT FTGTPSILKK  660
RNRDLLSPLS DRRNDKKLET DLTSCLARDF SRLDVMFDDG AANKASLLSP SSNQKRNSGS  720
FIEDKENLSG GQEKDKDIIV KDKTSEKDFD GSNSQENMKP KTVDTDSKTK IDADAASETV  780
KKPASILVEH NMNDLLFSPD QVGSKANRAL GSLARTPRTQ YCKGFGVTAN QGFSSEQSPR  840
NTSSPAVCKR SNESSAGAVA SVQAIPSLAL TGETTTTAGN DAGTENYNIF GETPFKRSIE  900
SPSAWKSPWF INSFVPGPRV DTEISIEDIG YFMSPGDRSY DALGLMKQLS EHTAAAYADA  960
LEVLGGESSE TLVNERNSKS PSMDQGIEHL PENENESSHL DSNVMMERRT LDFSECGTPA  1020
KGTETRKSLT GVNFSSPSSY LLKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein