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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY47526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 26903.4 Da PI: 8.8108 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.4 | 2.7e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C++dC++ p++ ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++ +q+++++ GAY47526.1 4 SCNGCRILRKGCSDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQCQAAVDA 102 6*********************9998667889****************************************************************999 PP DUF260 95 allke 99 +l ++ GAY47526.1 103 VLKGK 107 88765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MRMSCNGCRI LRKGCSDDCI IKPCLDWIKS SDAQANATLF LAKFYGRAGL INLIEAGPQH 60 LRPAIFKSLL YEACGRIVDP ISGSVGLLWS GKWEQCQAAV DAVLKGKTIT QNPSSSSSSS 120 SSNNNAPAAA PWTLNVQSPP PKIYDIRHVS KDPSAANCSD KTKARAKRSW NRRPKAPVVG 180 RESIQDQSSW LQSQVISRSE DDYESIFSVE TVEGSLDVNR NKQRWVQNGS GDVGLELTLC 240 LPPTNH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 8e-73 | LBD family protein |