PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47376.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 458aa MW: 52616.7 Da PI: 6.7948

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	213	259	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd ll+++v q+G + W+ Ia++++ gR +kqc++rw+++l GAY47376.1 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL 259 799***************************.***********97 PP
2	Myb_DNA-binding	55.8	1e-17	267	307	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+ GAY47376.1 267 IWSEEEDKALIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 307 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MELDTKLRDQ THHHASQQQP IFLSENYMKP ELPFEVPSSK GTHITNNLQD FDRHHHDLDD 60 DDGHHHLFVN LNGSSSTNPF SVHTSCFESL DAFPYNYSSS LNFDFYECKP FADHNYSSGN 120 GQVMDNFQSG GYLNYHQQQQ VNPVDILGSD HRSHMQLDFQ EMKPVNFLVS DEVSCVSAGN 180 GYYKKAGMNK NNNRAFHSVR KTMKIGKKSN VVKGQWTTEE DRLLIRLVDQ FGIRKWSHIA 240 QMLPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDKALIEAH AEIGNKWAEI AKRLPGRTEN 300 SIKNHWNATK RRQFSKRKCR SKYPRASLLQ DYIKSLNLDA AGSSKHQRKN SSNINANNKS 360 KAATKSSPPA AAEQDFCRSD HLVPDFDFNE VPDFDFDDKL FDENCSIDSL IEEMTCAPVV 420 DHQKSLDVKV PPLDVPPVME FEVKKELDLV EMISQANL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MELDTKLRDQ THHHASQQQP IFLSENYMKP ELPFEVPSSK GTHITNNLQD FDRHHHDLDD  60
DDGHHHLFVN LNGSSSTNPF SVHTSCFESL DAFPYNYSSS LNFDFYECKP FADHNYSSGN  120
GQVMDNFQSG GYLNYHQQQQ VNPVDILGSD HRSHMQLDFQ EMKPVNFLVS DEVSCVSAGN  180
GYYKKAGMNK NNNRAFHSVR KTMKIGKKSN VVKGQWTTEE DRLLIRLVDQ FGIRKWSHIA  240
QMLPGRIGKQ CRERWHNHLR PDIKKDIWSE EEDKALIEAH AEIGNKWAEI AKRLPGRTEN  300
SIKNHWNATK RRQFSKRKCR SKYPRASLLQ DYIKSLNLDA AGSSKHQRKN SSNINANNKS  360
KAATKSSPPA AAEQDFCRSD HLVPDFDFNE VPDFDFDDKL FDENCSIDSL IEEMTCAPVV  420
DHQKSLDVKV PPLDVPPVME FEVKKELDLV EMISQANL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	8e-99	MYB family protein