PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46964.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 297aa MW: 31651 Da PI: 7.8901

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	11	55	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+e d+ + +a ++ + +W++Ia+ ++ g++l+++k ++ GAY46964.1 11 VWTKEQDKAFENALVSYPEDasdRWEKIAADVP-GKSLEEIKQHYE 55 7******************************.********95 PP
2	Myb_DNA-binding	42	2.2e-13	123	167	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky GAY46964.1 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MTVDEVGSSS VWTKEQDKAF ENALVSYPED ASDRWEKIAA DVPGKSLEEI KQHYELLVDD 60 VNRIESGCVP LPSYNSSSDG SMSHAGDEGT SNGKKGGHYG HFNSESNGNK SSRSDQERRK 120 GIAWTEDEHR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR 180 SSIHDITSVN NGDISAPQGP ITGQTNGSGG GGSSGKSSKQ PPQHSAGPPG VGMYGAPTMG 240 QPIGGPLVSA VGTPVNLPAP AHMAYGVRAT VPGTVVPGAP MNVSPMPYPM PHASAHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-133	MYB family protein