PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY46447.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 507aa MW: 55580.3 Da PI: 8.1016

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY46447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.5e-16	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++v+++G g+W+++ r g+ R++k+c++rw ++l GAY46447.1 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81 79******************************************9986 PP
2	Myb_DNA-binding	51.7	2e-16	87	130	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +++eE+ l+v++++qlG++ W++ a+ ++ gRt++++k++w++ GAY46447.1 87 KGTFSPEEERLIVELHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 130 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MLLGNSNGEQ LESGVGGLNV SDGSGGEGGV QLKKGPWTAA EDAILTEYVR KHGEGNWNAV 60 QRNTGLARCG KSCRLRWANH LRPNLKKGTF SPEEERLIVE LHAQLGNKWA RMAAQLPGRT 120 DNEIKNYWNT RVKRRHRQGL PLYPPEIQPQ HQHQHQHQHQ NHQQSSHSHH SYHSQPSTPT 180 TPTSSFSFPI AATTPTTPTG GHHQHHSLHH HFPPPCYSRS PTPSSLPPTP PPLSPGLRSP 240 HQPAFPTLTL FDTNTNTNAN NNSNAANSSV MSSNNISNTF NMPRTPPLLQ NPPRFKRFHS 300 DTSINTFAAN QNDINNNNNI NSSSSFQGSS NFSMPFLPFF RSPSSPSLLT SPTSNCNTSA 360 FPSATTKLLS HPSFSFGNQN SSAIYRNPDE KECILTSTGS VFNLKPELPS SQSLSQNVNA 420 EILRSKPKEE TGGQINMHED ISKLLNVIPS MQVPEWYNDS GEASNCQSSV VTDDNLGLEL 480 QQLASILHVD STTAPGSCSY DNLPGIC

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MLLGNSNGEQ LESGVGGLNV SDGSGGEGGV QLKKGPWTAA EDAILTEYVR KHGEGNWNAV  60
QRNTGLARCG KSCRLRWANH LRPNLKKGTF SPEEERLIVE LHAQLGNKWA RMAAQLPGRT  120
DNEIKNYWNT RVKRRHRQGL PLYPPEIQPQ HQHQHQHQHQ NHQQSSHSHH SYHSQPSTPT  180
TPTSSFSFPI AATTPTTPTG GHHQHHSLHH HFPPPCYSRS PTPSSLPPTP PPLSPGLRSP  240
HQPAFPTLTL FDTNTNTNAN NNSNAANSSV MSSNNISNTF NMPRTPPLLQ NPPRFKRFHS  300
DTSINTFAAN QNDINNNNNI NSSSSFQGSS NFSMPFLPFF RSPSSPSLLT SPTSNCNTSA  360
FPSATTKLLS HPSFSFGNQN SSAIYRNPDE KECILTSTGS VFNLKPELPS SQSLSQNVNA  420
EILRSKPKEE TGGQINMHED ISKLLNVIPS MQVPEWYNDS GEASNCQSSV VTDDNLGLEL  480
QQLASILHVD STTAPGSCSY DNLPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55020.1	9e-71	MYB family protein