PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44965.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 446aa MW: 49473.9 Da PI: 7.7829

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl GAY44965.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.3	4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ GAY44965.1 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPLS EVENGEDKNQ TTNSQDKVSG VSGELNLLNT ELTAKHGTTA ALNEQKPTSV 180 TAQAYHLSEI QGSSIPSTVN NNRSNFYTHR FASSNQESSS ITNSQPSDFV GHFPLQQLNC 240 ASNARLSTAA SNSPLWFMQT SKSFDINSQF SSNAMPTILP PVSSSSLFSA PMSYKTSVTL 300 PSDNHSIPSF TVNGSRYWEA GGASNSNSVS SSSTELQSTS SFLESSIFPW GLADCSSSEK 360 EGQINLIDSH PDDVKWPEYF QTPSLLMAAA LQNQTSQSLY NEIKSETHFL TDSSSGIWPQ 420 NQQQPLQNSD ICAKEIQRLT ATYGHI

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPVTHKPLS EVENGEDKNQ TTNSQDKVSG VSGELNLLNT ELTAKHGTTA ALNEQKPTSV  180
TAQAYHLSEI QGSSIPSTVN NNRSNFYTHR FASSNQESSS ITNSQPSDFV GHFPLQQLNC  240
ASNARLSTAA SNSPLWFMQT SKSFDINSQF SSNAMPTILP PVSSSSLFSA PMSYKTSVTL  300
PSDNHSIPSF TVNGSRYWEA GGASNSNSVS SSSTELQSTS SFLESSIFPW GLADCSSSEK  360
EGQINLIDSH PDDVKWPEYF QTPSLLMAAA LQNQTSQSLY NEIKSETHFL TDSSSGIWPQ  420
NQQQPLQNSD ICAKEIQRLT ATYGHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-104	MYB family protein