PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY43911.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 294aa MW: 32055.6 Da PI: 7.7817

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY43911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.1	1.1e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+ GAY43911.1 4 SCNGCRVLRKGCNENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allke 99 +l ++ GAY43911.1 103 VLKGA 107 98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MRMSCNGCRV LRKGCNENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSEAAAIG 120 QGPPLKAYDI RHVSKDENSS ASVDRVKTRC RVKRVVKPKA NCNKAEVNMV DDLARCAEEM 180 NRSTSHESSL SHQSELAVVE NESKESDSMV SAETAETASL LFRAEPESGA KRSERVGWDS 240 CGEIGLGLEL TLGFEPVAVS RANHVVPMKK RKLEDRSTCD VDTCKVELGL DFPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-95	LBD family protein