PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42419.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 129aa    MW: 14197.1 Da    PI: 8.2262
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.52.6e-44121111100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+ rr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++l+e++r++a+ss+vyeA+ar +dPv+G+vg i++lq+q+e+l+a+lal+++
  GAY42419.1  12 PCAACKLIRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELQEHQRSEAVSSMVYEANARFHDPVRGCVGAISSLQKQVESLQAQLALAQA 110
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  GAY42419.1 111 E 111
                 6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MESGTRQGAL SPCAACKLIR RRCAQDCVFA PYFPADEPQK FASVHKVFGA SNVNKMLQEL  60
QEHQRSEAVS SMVYEANARF HDPVRGCVGA ISSLQKQVES LQAQLALAQA EVEQMRMRLI  120
SPSSSSSHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-58LBD family protein