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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY41862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 1450aa MW: 163232 Da PI: 6.5337 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.8e-13 | 1158 | 1203 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk++G+++W++I ++ + Rt+k+c++rw + GAY41862.1 1158 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 1203 79*************************8887799**********87 PP | |||||||
2 | Myb_DNA-binding | 41.1 | 4.3e-13 | 1214 | 1253 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++ eE+ + +++ +q+G++ W++Ia +++ gRt++++k++w GAY41862.1 1214 KFSLEEERIVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 1253 799*****************.*********.*********** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1450 aa Download sequence |
MARWDEILSL PVQNPPTLEF ASVDLVWSKV EGWRDKLDRV ALIPFARVDD FVRGESSNKD 60 CPTRFHVEAR RRRSTSTSCK PKVDGILEYI LYWCSFGPDD HRKGGIVRPS RTTYVPKKKN 120 AGRPNTKRGC TCHFIVKRLI AEPSVALIIY NDEKHVDKNG LPCHGPQDKK AAGTRAMFAP 180 YISEDLRLRV LSLLHVGVSV ETIMQRHNES VERQGGPCNR DDLLTHRYVR RQERSIRRST 240 YELDLDDAVS INMWVESHQS YVFFYEDFSE YDPFTLGIQT EWQLQQMIRF GNRSLLASDS 300 RFGTNKLKYP LHSLIVFNSD KKAIPVAWVI APSFSSADTH RWMRALYNRV RTKDPTWNLA 360 GFIVDDPSAD CSVLVSFWRV RHAWHKNLVK RCSEIGMRAE IFRCLGVAVD DICKGHGTIA 420 LFENCMEDFM DGSDFMDYFK AVWYPRIGAW ITVLKTLPLA SLETSAAMEF YHNQLKVRLL 480 NEKDSGVYQR TDWLVDKLGT KVHSYFWLDE YTGKDDFARY WKDEWVSGLT CWRKALKILD 540 SDVVIEGRCG KVTDQLDGNK VYVVRNPGSQ FGICNCSWAE MGYLCEHLLK YNKALMDMLH 600 CTPHDSLIRD HAISLAVSIQ KQLNASVDFE SSQISVASVE KQIVETNEQQ TVGTFHADQD 660 RELVNEGHCV NDDVSSQKGR NRGEELVASG GTANELAGGL INQLVSANSL CGGTTEEEIS 720 FAKTDVEQSP IYISTPGLVS VDELASSGGF SKNEQRALVS DAEISGYTHS KDAAVTDQNE 780 AEEGISDKDC HQDLDVEPFT IDMPPPTMEF LEQCTVSPQN GISSLDPQLP VLSNKADADS 840 HSDKASRPMY MPVESKAVGV SETAGIVGDN ENEVGNAKGG AAKSPCSTDI ALVSDGSCDD 900 AANNSNTCHN ANGVQSVMPS ESSRNHMSIP SDTENQQAVG VVSQKINSCS VPLGDKPSVN 960 VCELKRNAEE GDCDNKLTVT KKAKTENEPA SLKLEKHHTD AGTSSVYCNI IRPTPRFLLS 1020 DVVPDKILHK RRKGNGVIYF YLYEIDELKN KHSKRKLVRA RVRVRVRVRV RLGHENDEID 1080 RKIKSSRGIC VILSTSFECE KKLGNVGELV ERCGGNRLNR RLLKNKEKER RVEEEVSAIE 1140 VGELRVEAME GKREEIRKGP WKAEEDEVLI NHVKKYGPRD WSSIRSKGLL QRTGKSCRLR 1200 WVNKLRPNLK NGCKFSLEEE RIVIELQAQF GNKWARIATY LPGRTDNDVK NFWSSRQKRL 1260 ARILQNSATT SCSNSKSYKT KREFPASPDA STLEAPKFTS SMEEESSSKR QSCLSSNMMG 1320 NAELIAMAPL PEMINPKLLH FGASCENNPC TEPVLPIYFP QISQPQQDLP FSPESQELLA 1380 RLEDPYFFDV FGPVDAPPEL SGQPFLKPET SCRTGMKDEN DKTVNPDAFF DDFPTDMFDH 1440 IEPLPSPSDW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1030 | 1056 | KRRKGNGVIYFYLYEIDELKNKHSKRK |
2 | 1059 | 1069 | RARVRVRVRVR |
3 | 1061 | 1071 | RARVRVRVRVR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 9e-94 | MYB family protein |