PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY40377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 193aa MW: 22462 Da PI: 6.7465 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 1.9e-20 | 29 | 90 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF + r+ps++++++++++l +++ ++V++WFqN++a+e++ GAY40377.1 29 KCGRWNPTSEQVKVLTDLFTSgLRTPSTDQIQKISTQLsfygKIESKNVFYWFQNHKARERQ 90 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.4 | 1.1e-36 | 29 | 92 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ GAY40377.1 29 KCGRWNPTSEQVKVLTDLFTSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKR 92 678***********************************************************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence |
MDERISGFYV KAGHVRAGNG NDNSDTGTKC GRWNPTSEQV KVLTDLFTSG LRTPSTDQIQ 60 KISTQLSFYG KIESKNVFYW FQNHKARERQ KRRKVSVDYD HQKDLIRHVD KISSPKHYVE 120 FHNSHMHVAG EAHDEPERVI ETLQLFPLNS FDDQESEKMR MHGDEFKEEG TTFSYTIGTE 180 MDHPPLDLRL NFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11260.1 | 5e-70 | WOX family protein |