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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY38542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 274aa MW: 31302 Da PI: 4.7059 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.6 | 3.3e-41 | 24 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+q+e kael+l+ + GAY38542.1 24 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLEPPEKDEAMRTIIFQSDVRANDPVGGCYRIIKELQRQIEYNKAELELVLH 122 7*********************************************************************************************99877 PP DUF260 100 e 100 + GAY38542.1 123 Q 123 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence |
MSNNAKYNTN ASIPRIGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFLNAHKLF 60 GVSNITKIIK HLEPPEKDEA MRTIIFQSDV RANDPVGGCY RIIKELQRQI EYNKAELELV 120 LHQLAICRAQ AQQQAQAQLQ IPETDDSVLT FDIVSADPLN TFNSMQNFQY MQTQQEDQEE 180 YVNVDVNVQN HNLQEADVNA WALQDPAIVS TLNVKQDFLN NNDQSSTTTT VEDVKPSQQQ 240 LVEIPYERPD VKFEQEQDLV ERRFVPSTQL LISS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-68 | LBD family protein |