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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY38519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 44059.4 Da PI: 6.5857 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.3 | 4.1e-19 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++v+ +G g+W++++++ g+ R++k+c++rw +yl GAY38519.1 30 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 77 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 83 | 125 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ GAY38519.1 83 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 125 899*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence |
RETERQRDRK TETETEMGHH SCCNKQKVKR GLWSPEEDEK LINYVTTYGH GCWSSVPKHA 60 GLQRCGKSCR LRWINYLRPD LKRGSFSPQE AALIIELHSI LGNRWAQIAK HLPGRTDNEV 120 KNFWNSSIKK KLMSHEIVPA LASFPADFHN STCPEEVGFF SLNTNPNLIL NSHQQDHQFH 180 LPSPPPMFHN NFDQAEFKLN LSNYNVASIH FPPPPTIIPS SSTSSSSLDW SLPHHLQPQV 240 HLDPNPLENQ IFSHIEPVAP PHYYDDIIGD HDNKLNTTDP SIVTMPYDQN PFLVPTMPKL 300 CEILEGTVCN LPSSSASLEG VDPIAKLSCG TTFSSGSYPY HVPADPMEYT DAIMSILQPL 360 STSPSSSLSS LSPLSRGTYA TSTNPNFPST SWGP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 3e-85 | MYB family protein |