PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34320.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 359aa MW: 40967.6 Da PI: 6.5031

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.9e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl GAY34320.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ GAY34320.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGRAPCCDKS GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILS SSFYSSSQMN ISRLVGAQTL VNPELLRLAT SLISTHHHRE 180 NQNQIQKFIY QNFQENQYQQ LVQPDSHQLQ IPLEACCTLT PPPPCVSHSN DQAQLMNSNV 240 EQFPTNFTNF SNQNCQQSEW QSNGMPSNLT EDYVPIPPSY SYYGSDQTVM DPSSETSNFH 300 SNNSNQSFNF ASVLSTPSSG STPLNSNSTY ISTEDERESN CSNMLKFEIP DILDVNEFM

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGRAPCCDKS GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILS SSFYSSSQMN ISRLVGAQTL VNPELLRLAT SLISTHHHRE  180
NQNQIQKFIY QNFQENQYQQ LVQPDSHQLQ IPLEACCTLT PPPPCVSHSN DQAQLMNSNV  240
EQFPTNFTNF SNQNCQQSEW QSNGMPSNLT EDYVPIPPSY SYYGSDQTVM DPSSETSNFH  300
SNNSNQSFNF ASVLSTPSSG STPLNSNSTY ISTEDERESN CSNMLKFEIP DILDVNEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-108	MYB family protein