PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

Dr15329.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 166aa MW: 18639.9 Da PI: 5.4181

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15329.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	76.4	5.2e-24	7	79	28	100
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +fa++hk+FGasnv+kll +lp ++r da+ ++ yeA+ar++dP+yG+v++i++lqqq+ l+++la+lk++ Dr15329.1 7 THFAAIHKVFGASNVSKLLLHLPVSDRFDAAVTISYEAQARLQDPIYGCVSHIFALQQQVVALQTQLASLKAQ 79 68******************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MRGLGATHFA AIHKVFGASN VSKLLLHLPV SDRFDAAVTI SYEAQARLQD PIYGCVSHIF 60 ALQQQVVALQ TQLASLKAQA SQSFVNLQEH KLFCNKMPSY VIDEQDGSQH GLFPAQEMNE 120 YENSEQKQAS FSFDENFSCA LEPHDLQDQD MEDLRSIAFA YLHHHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-32	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr15329.1