PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

Dr12110.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 322aa MW: 35513 Da PI: 4.8669

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++lv++ G g+W+ +ar g+ R++k+ ++rw +yl Dr12110.1 26 KGLWSPEEDDKLVKYMLSNGQGCWSDVARNAGLQRCGKSXRLRWINYL 73 678*******************************************97 PP
2	Myb_DNA-binding	51	3.2e-16	79	122	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ lG++ W+ Ia++++ gRt++++k++w++ Dr12110.1 79 RGAFSPQEEELIIHLHSVLGNR-WSQIAARLP-GRTDNEIKNFWNS 122 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MRKPDTPAKN TTTTNNNTGA VNKLRKGLWS PEEDDKLVKY MLSNGQGCWS DVARNAGLQR 60 CGKSXRLRWI NYLRPDLKRG AFSPQEEELI IHLHSVLGNR WSQIAARLPG RTDNEIKNFW 120 NSTIKKRLKN ASPNNSESPE TKEAVSGLAT LNEHEIMAMC MESSTSSSTS SVRVMYNNAS 180 DRYDPLPLPC FGYGMPSYGP GNYFHDSVGG GNAGVESGLF GSHGMVIEGG GGGLIGEGEL 240 YVPPLESVSL EDNGMTNNNN NNNNNNGNDN NNDMNKVISE NSVGGNNNGN YWEVENMRMG 300 EWELDDLMKD VPPFAFLDFQ VE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	1e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr12110.1