PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

Dr05645.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 198aa MW: 22932.5 Da PI: 6.8868

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05645.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+t ar g++Rt+k+c++rw++yl Dr05645.1 22 KGPWTMEEDLILINYIATHGEGVWNTLARSAGLKRTGKSCRLRWLNYL 69 79********************************************97 PP
2	Myb_DNA-binding	51.8	1.8e-16	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+ ++++++G++ W++Iar ++ gRt++++k++w++ Dr05645.1 75 RGNITPEEQFLIMELHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 118 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MGEEGNNMDK RLSSNQEAEV RKGPWTMEED LILINYIATH GEGVWNTLAR SAGLKRTGKS 60 CRLRWLNYLR PDVRRGNITP EEQFLIMELH ARWGNRWSKI ARQLPGRTDN EIKNYWRTRI 120 QKKNKHGDPM DYQNPMHSDG ASTSQTSGSM QDAATPTYTI PQMDNPHDPF YAPPFSNDCT 180 DNFWGVEDFW AMHSFHGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	9e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr05645.1