PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

Dr04330.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 242aa MW: 27258.8 Da PI: 10.3004

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04330.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	1.9e-14	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l ++ +++G W ++++ g++R++k+c++rw++yl Dr04330.1 16 RGAWSEEEDSRLRRCMEKYGAIKWCDVPSKAGLNRCRKSCRLRWLNYL 63 89********************************************97 PP
2	Myb_DNA-binding	29.4	1.8e-09	77	101	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l Dr04330.1 77 RWSLIAGRLP-GRTANDIKNHWNTHL 101 6*******.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGKCMAKDGN TSALRRGAWS EEEDSRLRRC MEKYGAIKWC DVPSKAGLNR CRKSCRLRWL 60 NYLSPSIKRG RVSFVLRWSL IAGRLPGRTA NDIKNHWNTH LSKKSTAKEK LWNPKIIAKG 120 TAGIKPREKK GEFKXIKPQP WTIPVNWSWL KDQPGHQGHL QDKSGINVDP LPPSANNINV 180 ARKKSAAVIP EKLDDVFLDI DGMXVGEMQT SFEVGNIGGN GDGEFFLQED AGWASFLLDM 240 DF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66390.1	7e-45	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr04330.1