PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

Dr03572.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 272aa MW: 30811.1 Da PI: 6.4241

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03572.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G ++W+++++ g+ R++k+c++rw +yl Dr03572.1 13 RGLWSPEEDEKLIKCITTYGHPCWSSVPKQAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	50.2	5.8e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ +++d+++ G++ W+ Ia++++ gRt++++k++w++ Dr03572.1 66 RGSFTAQEETIIIDVHRIVGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIKCITT YGHPCWSSVP KQAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT AQEETIIIDV HRIVGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL 120 DPKTHNLLPN ARPSPSSTTV LPFTITSTSS NGFDHAVMSF QDQPNVSSSC FDPTGFIDEA 180 SYAWSSTTAD HTLNVMNQTQ LQGLPQVEPQ QHXQQQQQQQ QQQGPMHVND NEMEFNTEAF 240 DLDFMESALS SSDVFCNGNS LDDHLNWDCQ DL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	3e-83	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr03572.1