PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

Dr02843.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 269aa MW: 30230.5 Da PI: 7.6227

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02843.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d + +G g+W++++++ g+ R +k+c++rw +yl Dr02843.1 15 KGLWSPEEDQRLRDFILSHGHGCWSSVPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E+e+ +++++lG++ W+ Ia +++ gRt++++k++w++yl Dr02843.1 68 RGMFSAQEEEIVMNLHAMLGNK-WSQIAMHLP-GRTDNEIKNYWNSYL 113 788*****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MGCRSCEKPK VHYRKGLWSP EEDQRLRDFI LSHGHGCWSS VPAKAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSAQEEEIVM NLHAMLGNKW SQIAMHLPGR TDNEIKNYWN SYLKKRVAKT 120 EPSKANNSAS RSQDSMSQSS KTRQLSTEFN SKHIEVVELS SVDSGQSLIH SNAPNPLAKV 180 LFADWLSVDH VNGQSSANLI NGXLSCNWDF NSNTEESMKP ELQSNAEFLH GFGESNILGD 240 FQSQFEVSGQ SSANGLFDIL SFGDHDVIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	1e-60	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr02843.1