PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014701-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 390aa MW: 43810 Da PI: 6.2347

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014701-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l+d++++ G+g+W+t +++ g+ R++k+c++rw +yl AUR62014701-RA 14 KGPWLPEEDLKLIDYIQKNGPGNWRTLPKKAGLERCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	31.8	3.2e-10	67	107	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ W++Ia++++ gRt++++k++w+++ AUR62014701-RA 67 RGRFSFEEEEAIIQLHS----V-WSAIAAKLP-GRTDNEIKNYWNTH 107 89999999999998875....3.*******.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGRAPCCDRD GLKKGPWLPE EDLKLIDYIQ KNGPGNWRTL PKKAGLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSVWSAIAA KLPGRTDNEI KNYWNTHIRK RMLRMGIDPV 120 THTRRLDYLD LPSLFGNHPS ILQNSSDQLN LLKLLGLQSL VKPNNLLSLA SLLSNNQNQN 180 ILLQNLQPHQ FSNPSDQILS QNQFINNNNN QVQNTIPTCS AMITPSHNTV FDETNPMKSS 240 LNHQQQYPTN YSNSNEHHFT AAPQTTPLVN DQWQQNSNSA GFSSEAAAVN IQDSGNYQAL 300 MDSLLDTLGL NSANNNNMSN NDEGLKMPSL LSTPSSSQQT PPLSTSNSAY QPNSSXXXXX 360 XXSEDEIDSY CQNLMNFDVS FDIFDNNVL*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGRAPCCDRD GLKKGPWLPE EDLKLIDYIQ KNGPGNWRTL PKKAGLERCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSVWSAIAA KLPGRTDNEI KNYWNTHIRK RMLRMGIDPV  120
THTRRLDYLD LPSLFGNHPS ILQNSSDQLN LLKLLGLQSL VKPNNLLSLA SLLSNNQNQN  180
ILLQNLQPHQ FSNPSDQILS QNQFINNNNN QVQNTIPTCS AMITPSHNTV FDETNPMKSS  240
LNHQQQYPTN YSNSNEHHFT AAPQTTPLVN DQWQQNSNSA GFSSEAAAVN IQDSGNYQAL  300
MDSLLDTLGL NSANNNNMSN NDEGLKMPSL LSTPSSSQQT PPLSTSNSAY QPNSSXXXXX  360
XXSEDEIDSY CQNLMNFDVS FDIFDNNVL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	2e-80	MYB family protein