PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009325-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 1026aa MW: 113261 Da PI: 4.7828

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009325-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.4e-19	49	95	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l AUR62009325-RA 49 RGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 95 89***************************9.**********986 PP
2	Myb_DNA-binding	60.8	2.8e-19	101	147	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+++G++ W+ Ia++++ gR +kqc++rw+++l AUR62009325-RA 101 KGPWSKEEDEVIVQLVNKYGPKKWSIIAQHLP-GRIGKQCRERWHNHL 147 79****************************.***********97 PP
3	Myb_DNA-binding	48.6	1.8e-15	153	195	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W +eE+++l++a++ +G++ W+ ++++ gRt++ +k++w+ AUR62009325-RA 153 KEAWNQEEELILIRAHQIHGNR-WAELTKYLP-GRTDNAIKNHWN 195 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1026 aa Download sequence
MESDRKIAAS LPPPPPSAPP GSLNGAKNAF SQVRPMHGRT SGPTRRSTRG QWTPEEDEIL 60 RKAVQRFKGK NWKKIAECFK DRTDVQCLHR WQKVLNPELI KGPWSKEEDE VIVQLVNKYG 120 PKKWSIIAQH LPGRIGKQCR ERWHNHLNPS INKEAWNQEE ELILIRAHQI HGNRWAELTK 180 YLPGRTDNAI KNHWNSSVKK KLDSYIASGL LAQFQGLPLV GHQSQSMPTT SLLVQQSSGE 240 GSVFKEGAEL EQNSESSQVG CSQSASDLSN TACQTKEDFL LSEESDHGKL QNASPTASCS 300 EQYYTEDITF TIPDLPYEFS CSSKYLEDNF SREHGVCATG NSSFGTISLP NVSSVELGAD 360 SSNLSENYYF ADTMSGMVPG PSHHHSIDYD ALASVSNVAV NSDTSVLRQK TEEDCSELLL 420 EQEGGDGCPV NITNCSEIID MDRFRDYLSF QAIFQLPETS GHVALQPNGP LEPSNCEPSN 480 PCEEFNQISD SLAISEAQNI ANVDEGFFPA YNNSGSSFYD HINAGLTEQT ELKEPSRLVP 540 VNTFSPEASD DQKTESSAVE RPVNATCKLE AGILCYEPPR FPCLDIPFFS CDLAQPGNDV 600 HQEFSPLGIR QMVMSSMNSL TPIWDSPSRD GSPVAVLKSA AKTFACTPSI LKKRHRDLLS 660 PLSPFSDRRC DKKTGSSSKQ EFLCTSRLTN EFSRLDVMFD EADDSKESAS NDQNNHVPIE 720 DKENICPALE GELEEASHNN AESGDKIEEN KKDFKDMEKE ENLEQILEKS VHEDCTAETP 780 KGVLVERYFS DAQYTSLDGA GPKTGSEIGG KTVEVHSAKM TSKQQAAMPE SMTSKAKSVV 840 SPPLFVQKKQ NIDSDSLINE VGAENLNIFG GTPFRRSIES PSAWKSPWYF SSVVACSRFE 900 AEAMIEDIGI FMSPGDRSYD ALGLMKQINE QSAEAYADAR EVLGSETPES ILRQRCLKSQ 960 NLEDQSNKFA DSQLDSRLRM ASNVSSERRV LDFSECGTPA KAAEKGKSVT AASLSSPSCL 1020 LKSYR*

Sequence ? help Back to Top

Protein Sequence Length: 1026 aa Download sequence

MESDRKIAAS LPPPPPSAPP GSLNGAKNAF SQVRPMHGRT SGPTRRSTRG QWTPEEDEIL  60
RKAVQRFKGK NWKKIAECFK DRTDVQCLHR WQKVLNPELI KGPWSKEEDE VIVQLVNKYG  120
PKKWSIIAQH LPGRIGKQCR ERWHNHLNPS INKEAWNQEE ELILIRAHQI HGNRWAELTK  180
YLPGRTDNAI KNHWNSSVKK KLDSYIASGL LAQFQGLPLV GHQSQSMPTT SLLVQQSSGE  240
GSVFKEGAEL EQNSESSQVG CSQSASDLSN TACQTKEDFL LSEESDHGKL QNASPTASCS  300
EQYYTEDITF TIPDLPYEFS CSSKYLEDNF SREHGVCATG NSSFGTISLP NVSSVELGAD  360
SSNLSENYYF ADTMSGMVPG PSHHHSIDYD ALASVSNVAV NSDTSVLRQK TEEDCSELLL  420
EQEGGDGCPV NITNCSEIID MDRFRDYLSF QAIFQLPETS GHVALQPNGP LEPSNCEPSN  480
PCEEFNQISD SLAISEAQNI ANVDEGFFPA YNNSGSSFYD HINAGLTEQT ELKEPSRLVP  540
VNTFSPEASD DQKTESSAVE RPVNATCKLE AGILCYEPPR FPCLDIPFFS CDLAQPGNDV  600
HQEFSPLGIR QMVMSSMNSL TPIWDSPSRD GSPVAVLKSA AKTFACTPSI LKKRHRDLLS  660
PLSPFSDRRC DKKTGSSSKQ EFLCTSRLTN EFSRLDVMFD EADDSKESAS NDQNNHVPIE  720
DKENICPALE GELEEASHNN AESGDKIEEN KKDFKDMEKE ENLEQILEKS VHEDCTAETP  780
KGVLVERYFS DAQYTSLDGA GPKTGSEIGG KTVEVHSAKM TSKQQAAMPE SMTSKAKSVV  840
SPPLFVQKKQ NIDSDSLINE VGAENLNIFG GTPFRRSIES PSAWKSPWYF SSVVACSRFE  900
AEAMIEDIGI FMSPGDRSYD ALGLMKQINE QSAEAYADAR EVLGSETPES ILRQRCLKSQ  960
NLEDQSNKFA DSQLDSRLRM ASNVSSERRV LDFSECGTPA KAAEKGKSVT AASLSSPSCL  1020
LKSYR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein