PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008199-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 457aa MW: 51253.3 Da PI: 6.1208

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008199-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.1e-16	205	251	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed ll d+v ++G + W+ Ia+ ++ gR +kqc++rw+++l AUR62008199-RA 205 KGQWTKAEDNLLTDLVDRYGVRKWSQIAQLLN-GRVGKQCRERWHNHL 251 799***************************.***********97 PP
2	Myb_DNA-binding	55.1	1.7e-17	257	299	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eEd +l++a+ + G++ W+ Ia+ ++ gRt++++k++w+ AUR62008199-RA 257 KDDWTEEEDRILINAHVEIGNK-WAEIAKLLP-GRTENSIKNHWN 299 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MDFEAKFREK FSPHPSLFLP QNNHSNPRDD QFSLEGALLS KGGTNFLQGL HPLFDLNFDL 60 HDGSSSTPNT FYPIHQPNCL EPYDNSPFDC VPNFDFYETK PLVNHATNNV ALVPLIDNLN 120 QNEGGIGVLG HSPIITPMNM ISPNAQGFNP FCYYDYLGPT NYRPSDEDSC TTPVTTTTLV 180 SDRLSTTTVV RKGGKGRKKK STPVKGQWTK AEDNLLTDLV DRYGVRKWSQ IAQLLNGRVG 240 KQCRERWHNH LKPNIKKDDW TEEEDRILIN AHVEIGNKWA EIAKLLPGRT ENSIKNHWNA 300 TKRKQFSKRK CKSKNPKQSY LLQEYIQGLT LEKINAGCRK RPLSYANPPT AALETNTESP 360 TEHPTGGSSN SSLGELVQPE YDFSEVPDFN FDAQMFEESS IDSLLDYAPP GDNRGSVGHG 420 LAEIVDESEG HLVANMMQNG VKMEFDLVEM INHVSL*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MDFEAKFREK FSPHPSLFLP QNNHSNPRDD QFSLEGALLS KGGTNFLQGL HPLFDLNFDL  60
HDGSSSTPNT FYPIHQPNCL EPYDNSPFDC VPNFDFYETK PLVNHATNNV ALVPLIDNLN  120
QNEGGIGVLG HSPIITPMNM ISPNAQGFNP FCYYDYLGPT NYRPSDEDSC TTPVTTTTLV  180
SDRLSTTTVV RKGGKGRKKK STPVKGQWTK AEDNLLTDLV DRYGVRKWSQ IAQLLNGRVG  240
KQCRERWHNH LKPNIKKDDW TEEEDRILIN AHVEIGNKWA EIAKLLPGRT ENSIKNHWNA  300
TKRKQFSKRK CKSKNPKQSY LLQEYIQGLT LEKINAGCRK RPLSYANPPT AALETNTESP  360
TEHPTGGSSN SSLGELVQPE YDFSEVPDFN FDAQMFEESS IDSLLDYAPP GDNRGSVGHG  420
LAEIVDESEG HLVANMMQNG VKMEFDLVEM INHVSL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-67	MYB family protein