PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc11387.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 182aa    MW: 19336.4 Da    PI: 4.8469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc11387.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.4e-21251255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zpz_sc11387.1.g00010.1.am.mk  2 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 51
                                  59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-30161No hitNo description
Gene3DG3DSA:3.30.730.103.7E-33261IPR001471AP2/ERF domain
PROSITE profilePS5103223.354259IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-23261IPR016177DNA-binding domain
SMARTSM003801.5E-35265IPR001471AP2/ERF domain
PfamPF008473.2E-15351IPR001471AP2/ERF domain
PRINTSPR003671.2E-11314IPR001471AP2/ERF domain
PRINTSPR003671.2E-112541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDQAAYRLR GDAARLNFPD  60
NAASRAPLDP AVDAKLQTIC ATIAAASKGK GGKGARAVPI NAPCAQQPES PSHSSSDEGT  120
GSGSDDEGSS SAAAAAAVAA VAPLAEMGQL DFSEVPWDEA ESFVLCKYPS YEIDWDALLA  180
SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21159463ATERF1
3gcc_A4e-21159463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc11387.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4938001e-102AF493800.1 Zea mays DRE binding factor 1 (dbf1) mRNA, complete cds.
GenBankBT0638171e-102BT063817.1 Zea mays full-length cDNA clone ZM_BFc0109P18 mRNA, complete cds.
GenBankEU9632051e-102EU963205.1 Zea mays clone 259110 DRE binding factor 1 mRNA, complete cds.
GenBankKJ7278181e-102KJ727818.1 Zea mays clone pUT5770 AP2-EREBP transcription factor (EREB204) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.13e-90ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E47e-50RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0A9FEZ54e-92A0A0A9FEZ5_ARUDO; Uncharacterized protein
STRINGPavir.Fa01600.1.p1e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-34ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]